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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015891685.1_cds_XP_016446539.1_41385
CDS Infomation

[gene=LOC107771627] [db_xref=GeneID:107771627] [protein=probable polygalacturonase At3g15720] [protein_id=XP_016446539.1] [location=join(4173..4202,4471..4596,4753..4890,5229..5405,5503..5526,5626..5833,6536..6617,6704..6809,6931..7047,7340..7567)] [gbkey=CDS]
Sequence

ATGGTTCTTGTACTAGCTGGTACTACAATGGTTTACTTGGGAATTTTCTTGGTTTTGTTG
TGCATGTTTTCTCCTGTATGGAGTGCTGATGACATTAAAACTTTCAACGTCGTGAATTTT
GGGGCAGTCGGAGACGGAAGAAATGATGATCTCCCAGCTTTCCTCAAGGCATGGGAAGCT
GTCTGTCAATCGGAATCCAGTCGTGTAATTCTTGTTATACCAGAAAGAAAGAAATTCTTA
CTGACGCCTTCAACATTTGAGGGTCCTTGCAAACCTTCTTTTATCCATATTCAGGTATCA
GGAAATATAATTGCACCTAACTCAAAATCGGGATGGGATGGACGTGCAACCAATGCATGG
CTCATTTTTGAGAATATCGACCATCTTACTGTTAATGGCAATGGAGTTTTTGACGGCCAA
GGCCATGTATGGTGGTCTAATCCTTGCTTGGATAATAACAACCCATCCCAAGAAACACAA
TGCAAAGGACCAACTGCATTGGTTTTCAGACGATGCGACCGGCTGCGAGTTTGGGGTGTA
ACGCTAATTAGAAGTGCTAGAAGTCATATCATATTGACTGCTTGCAATGAAGTTAGTATC
GCCAATATTCGTATTATGTCCCCCGGTGACAGTCCTAACACCGATGGGATTGACGTTTCC
GGTAGCACAAACGTACGAATACACAACTCCCTCATTGCAACAGGCGACGACTGTATTGCA
ATAGGAGGAGGATCGTCCAATGTCAATATTAGCGGCATAACATGCGGACCAGGCCATGGT
ATTAGTATTGGATCCTTGGGAGAAGGAGGATTTGAAATTGTGGAAGATGTGCGCGTACGA
AATTGCACGATTAAAGACACCTTAACAGGAGTAAGAATTAAGACCTGGCAGGGAGGCGAA
GGGTATGCAAGGAGGATAACATTTGAAGGAATAAAATTGGTTGAAGTCAACAATCCCATC
ATCATCGACCAGTTTTACTGTCCCAGCCGAGTCAATTGCAAAAATGATACAGCTGCAGTT
GCATTGAGCGACATAACATTCAGAGGAATATCAGGGACATCCCTGATGGACGAGGTGATA
AATCTGAGCTGCAGCGAAACTGTTGGCTGCAAAAACATACTTCTCGATCGTGTGTATATA
TCATCTGTTAAGGGTAACCCTGTTCATGCCAAGTGCGTTAATGCTCATGGAAGGCACACT
CATACTAGGCCTGTTGTGAACTGTCTGCTGCCATAG

Peptide Sequence

PEP ID

XP_016446539.1
PEP Infomation

PREDICTED: probable polygalacturonase At3g15720 [Nicotiana tabacum]
Sequence

MVLVLAGTTMVYLGIFLVLLCMFSPVWSADDIKTFNVVNFGAVGDGRNDDLPAFLKAWEA
VCQSESSRVILVIPERKKFLLTPSTFEGPCKPSFIHIQVSGNIIAPNSKSGWDGRATNAW
LIFENIDHLTVNGNGVFDGQGHVWWSNPCLDNNNPSQETQCKGPTALVFRRCDRLRVWGV
TLIRSARSHIILTACNEVSIANIRIMSPGDSPNTDGIDVSGSTNVRIHNSLIATGDDCIA
IGGGSSNVNISGITCGPGHGISIGSLGEGGFEIVEDVRVRNCTIKDTLTGVRIKTWQGGE
GYARRITFEGIKLVEVNNPIIIDQFYCPSRVNCKNDTAAVALSDITFRGISGTSLMDEVI
NLSCSETVGCKNILLDRVYISSVKGNPVHAKCVNAHGRHTHTRPVVNCLLP

Transcript Sequence

Gene sequence data has not been registered.